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Genome Genomics

Complete, gapless human genome sequence published


The T2T consortium have published the first complete, gapless sequence of a human genome, two decades after the Human Genome Project produced the first draft human genome sequence. Having a complete, gap-free sequence of the roughly 3 billion bases in our DNA is critical for understanding the full spectrum of human genomic variation and for understanding the genetic contributions to certain diseases.

This will significantly add to our knowledge of chromosomes, including more accurate maps for five chromosome arms, to answer basic biology questions about how chromosomes properly segregate and divide. The T2T consortium used the now-complete genome sequence as a reference to discover more than 2 million additional variants in the human genome. These studies provide more accurate information about the genomic variants within 622 medically relevant genes. 

Consortium co-chair Adam Phillippy believes that sequencing a person’s entire genome should become less expensive and more straightforward, enabling physicians to better guide their healthcare.


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Categories
Genome

Fast, scalable software analyzes the human genome

Peter White at Nationwide Children’s Hospital has developed Churchill,  software that searches raw sequence data on a person’s genome for disease-causing variations in hours, not weeks.  He believes that large scale analysis across populations is now possible.

In tests, Churchill analyzed a whole genome sequence in 90 minutes from a raw FASTQ text-based format through to identifying variant cells at high confidence. An exome, which contains the bulk of disease causing variants, can be analyzed in one hour.

Advancing sequencing technologies can make genomic medicine possible. The Churchill algorithm has been licensed to GenomeNext for commercialization.

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