Categories
Genome Genomics

Complete, gapless human genome sequence published


The T2T consortium have published the first complete, gapless sequence of a human genome, two decades after the Human Genome Project produced the first draft human genome sequence. Having a complete, gap-free sequence of the roughly 3 billion bases in our DNA is critical for understanding the full spectrum of human genomic variation and for understanding the genetic contributions to certain diseases.

This will significantly add to our knowledge of chromosomes, including more accurate maps for five chromosome arms, to answer basic biology questions about how chromosomes properly segregate and divide. The T2T consortium used the now-complete genome sequence as a reference to discover more than 2 million additional variants in the human genome. These studies provide more accurate information about the genomic variants within 622 medically relevant genes. 

Consortium co-chair Adam Phillippy believes that sequencing a person’s entire genome should become less expensive and more straightforward, enabling physicians to better guide their healthcare.


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Categories
Aging Genetics Genomics Longevity

Genetic “Ageotypes” predict health as we age

Stanford’s Michael Snyder has categorized how humans age into different classes called “ageotypes”: metabolic, immune, hepatic and nephrotic.

43 healthy men and women between the ages of 34 and 68 were profiled, with extensive measurements of certain microbes and biological molecules, such as proteins, metabolites and lipids, taken at least five times over two years.

Snyder said that the study enabled the researchers to see clear patterns of how individuals experience aging on a molecular level and help them focus on health-risk factors and find the areas in which they’re most likely to encounter problems in the future.

For example, those who are metabolic agers might be at a higher risk for diabetes or show signs of elevated hemoglobin A1c as they grow older. Immune agers might generate higher levels of inflammatory markers or be more prone to immune-related diseases as they age. The ageotypes are not mutually exclusive. They signify the pathways in which increases in aging biomarkers are most pronounced

Differences in aging between healthy and insulin resistant participants were studied for the first time. Snyder discovered 10 molecules that significantly differed between insulin-sensitive and insulin-resistant people as they age. Many of those markers were involved in immune function and inflammation.

In some people, their markers decreased, at least for a short period, when they changed their behavior. The overall rate at which they aged declined, and in some cases aging markers decreased. This occured in molecules including hemoglobin A1c and creatine, a marker for kidney function, among a small subset of participants.

In that subset, Snyder said, there were individuals who made lifestyle changes to slow their aging rate. Among those who exhibited decreased levels of hemoglobin A1c, many had lost weight, and one made dietary changes. Some who saw a decrease in creatine, indicating improved kidney function, were taking statins. In other cases, exactly why rates of aging markers waned was unclear. For some people, there were no obvious behavioral changes, yet the team still saw a decreased rate of aging along their ageotype pathways. There was also a handful of people that maintained a slower-than-average aging rate throughout the entire study.

Prof Snyder was a speaker at the 2019 ApplySci conference at Stanford.


Join ApplySci at the 13th Wearable Tech + Digital Health + Neurotech Silicon Valley conference on February 11-12, 2020 at Quadrus Sand Hill Road.  Speakers include:  Zhenan Bao, Stanford – Vinod Khosla, Khosla Ventures – Mark Chevillet, Facebook – Shahin Farshchi, Lux Capital – Carla Pugh, Stanford – Nathan Intrator, Tel Aviv University | Neurosteer – Wei Gao, Caltech – Sergiu Pasca, Stanford – Walter Greenleaf, Stanford – Sheng Xu, UC San Diego – Dror Ben-Zeev, University of Washington – Mikael Eliasson, Roche  – Unity Stoakes, StartUp Health – Garth Smith, Ontario Brain Institute – Erika Ross, Abbott Neuromodulation

Categories
Featured Genomics Longevity

George Church on reversing aging | ApplySci @ Harvard

George Church again keynoted the ApplySci Boston conference, this year at Harvard Medical School on November 14, 2019.

Click to view his groundbreaking talk on reversing aging.


Join ApplySci at the 13th Wearable Tech + Digital Health + Neurotech Silicon Valley conference on February 11-12, 2020 at Quadrus Sand Hill Road.  Speakers include:  Zhenan Bao, Stanford – Vinod Khosla, Khosla Ventures – Mark Chevillet, Facebook – Shahin Farshchi, Lux Capital – Carla Pugh, Stanford – Nathan Intrator, Tel Aviv University | Neurosteer – Wei Gao, Caltech – Sergiu Pasca, Stanford – Walter Greenleaf, Stanford – Sheng Xu, UC San Diego – Dror Ben-Zeev, University of Washington – Mikael Eliasson, Roche  – Unity Stoakes, StartUp Health – Garth Smith, Ontario Brain Institute

Categories
Brain Genomics

Video: George Church on reading and writing brain structures and functions

Recorded at ApplySci’s Wearable Tech + Digital Health + Neurotech Boston conference on September 19th at the MIT Media Lab


Join ApplySci at Wearable Tech + Digital Health + Neurotech Silicon Valley on February 26-27, 2018 at Stanford University. Speakers include:  Vinod Khosla – Justin Sanchez – Brian Otis – Bryan Johnson – Zhenan Bao – Nathan Intrator – Carla Pugh – Jamshid Ghajar – Mark Kendall – Robert Greenberg – Darin Okuda – Jason Heikenfeld – Bob Knight – Phillip Alvelda – Paul Nuyujukian –  Peter Fischer – Tony Chahine – Shahin Farshchi – Ambar Bhattacharyya – Adam D’Augelli – Juan-Pablo Mas – Michael Eggleston – Walter Greenleaf – Jacobo Penide